species:   Scscl
pid:       PID1698
parent:    Ssc-milR-174
paralog:   
locus:     NW_001820824.1:42279-42337
matures:   ['UGGACUGAUGGCAACGAUGGAUU', 'CCCAUCGAGAUUGACCAACGAUU']
srr:       SRR12527899
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram NW_001820824.1:42279-42337

62 out of bounds
6 alignments
5 proper strand
4 stranded perfect matches

************************          *************************
GCCCAUCGAGAUUGACCAACGAUUUUCUGAUGAAAGUGGACUGAUGGCAACGAUGGAUU
..((((((...(((.(((.(.((((((....)))))).).....))))))))))))...
------------------------------------UGGACUGAUGGCAACGAUGGAUU l=23 a=1 c
-CCCAUCGAGAUUGACCAACGAUU----------------------------------- l=23 a=0 c*
------------------------------------UGGACUGAUGGCAACGAUGGAUU l=23 a=1 ma
-CCCAUCGAGAUUGACCAACGAUU----------------------------------- l=23 a=0 ma*

-----UCGAGAUUGACCAACGAUU----------------------------------- l=19 a=1 
-----UCGAGAUUGACCAACGgUUUUC-------------------------------- l=22 a=1 
-----------UUGACCAACGAUUUUCUGAUG--------------------------- l=21 a=1 
------------------------------------UGGACUGAUGGCAACGAUGGAU- l=22 a=1 
------------------------------------UGGACUGAUGGCAACGAUGGAUU l=23 a=1 (c,ma)

mb-01111
ax-1001011
ku-01
ss-110111101100
fn-111
